English CV here


桂松涛.

学历: 博士(遗传学)        出生年月: 1991年1月        籍贯:山东临沂       政治身份:中共党员
通讯地址: 湖北省 武汉市 洪山区 狮子山街 1号 华中农业大学 第二综合楼 (430070 )

联系方式

研究方向


  • 作物群体遗传学、泛基因组和图形基因组;

  • 结合多组学数据解析作物复杂表型变异的遗传基础;

  • 开发作物多组学分析相关工具和数据库;

科研技能


  • 编程语言: Bash; Perl; R; Julia; Python(Read&Edit); Rust(Trying);

  • 操作系统: Linux(Debian, Ubuntu, Red Hat); Windows; HPC cluster(CentOS7-based)

  • 生物信息相关:

    • 主流测序/组学分析流程: 熟悉二代/三代DNA/RNA测序分析流程, 以及各种延伸组学测序分析(ATAC-seq, ChIP-seq)等;

    • 常规生物信息分析技术:

      • 群体遗传学: 遗传变异鉴定(SNP/INDEL/SV), 遗传图谱构建, 群体选择, 关联/连锁分析;

      • 进化生物学: 多序列比对, 系统发生树构建, 选择进化分析;

      • 基因组学: 基因组组装/注释, 比较基因组分析;

      • 统计分析: 熟练运用降维, 聚类, 富集, 假设检验等常规统计方法回答科学问题, 正在学习线性回归, 贝叶斯统计相关知识;

    • 数据可视化: 熟练运用R/ggplot, Julia/Makie, AdobeIllustrator, Photoshop等工具画图;

    • 按需开发流程: 已开发泛基因组构建流程, 基于WGS的SV鉴定流程, GWAS下游分析流程

    • Web开发相关: 曾设计复杂生物数据库网站, 了解前后端架构;

  • 生物学相关:

    • 进化 > 功能: 更习惯基于多组学数据, 以从宏观切入并逐步细化的方式回答科学问题;

    • 理论 > 实验: 长期从事数据分析工作, 更擅长基础理论研究, 期待与擅长实验的团队合作;

科研经历


 
 
 
 
 

博士后

华中农业大学 作物遗传改良全国重点实验室; 合作老师: 严建兵 教授

2018年1月 – 今 武汉
承担课题:

  • 玉蜀黍属泛基因组的构建及其在玉米遗传育种中的应用;

  • 基于玉米群体各种遗传变异研究玉米表型变异的遗传基础;

  • 构建玉米多组学数据库 Zeamap

 
 
 
 
 

研发工程师(兼职)

华大基因; 科服研发部, 上级领导: 杨林峰

2018年12月 – 2019年12月 深圳
负责项目:

  • 与华大科服研发部的5名同事合作开发ZEAMAP数据库.

 
 
 
 
 

博士研究生

武汉大学 杂交水稻全国重点实验室; 导师: 丁毅 教授

2012年9月 – 2017年12月 武汉
承担/参与课题:

  • 中国莲(Nelumbo nucifera)高密度遗传图谱的构建;

  • 中国莲比较基因组和基部双子叶植物的进化研究;

  • 中国莲细胞器基因组的构建和进化分析(参与);

  • 中国莲着丝粒组蛋白和着丝粒进化分析(参与);

  • 水稻种质DNA指纹图谱的鉴定(参与);

兴趣 & 教育经历


兴趣

  • 群体遗传学
  • 图形基因组
  • Julia编程
  • 乒乓球

教育经历

  • 博士后(作物遗传育种), 2018-今

    华中农业大学

  • 博士(遗传学), 2012-2017

    武汉大学

  • 学士(生物科学), 2008-2012

    山东师范大学

资助 & 奖励


  • 2021-2023, 国家自然科学基金青年基金, 32000396, 主持

  • 2020, 第一届全国作物学科博士后论坛, 优秀报告奖;

  • 2019-2021, 华中农业大学 植物科学与技术学院, 优秀博士后资助;

  • 2017, 第七届湖北植物生物学大会, 优秀报告一等奖;

  • 2016, 全国植物生物学大会, 优秀墙报三等奖;

  • 2016, 武汉大学, 博士研究生国家奖学金;

发表文章


#: 共同一作; *: 通讯作者

Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication

article sequencing pangenome single-cell domestication physiology
GUI SONGTAO, Martinez-Rivas Juan Felix, Wen Weiwei, Meng Minghui, Yan Jianbing, Usadel Björn, Fernie R. Alisdair
Publication year: 2022
The Plant Journal, n/a

A pan-Zea genome map for enhancing maize improvement

article Zea pan-genome structural variation GAB
GUI SONGTAO, Wei Wenjie, Chenglin Jiang, Luo Jingyun, Wu Shenshen, Li Wenqiang, Wang Yuebin, Li Shuyan, Yang Ning, Li Qing, Fernie R. Alisdair, Yan Jianbing*
Publication year: 2022
Genome Biology, 178, 23

Genome sequencing reveals evidence of adaptive variation in the genus Zea

article Zea WGS adaptation selection
Chen Lu#, Luo Jingyun#, Jin Minliang#, Yang Ning#*, Liu Xiangguo, Peng Yong, Li Wenqiang, Philips Alyssa, Cameron Brenda, Bernal Julio, Rubén Rellán-Álvarez, Sawers JH Ruairidh, Qing Liu, Yin Yuejia, Ye Xinnan, Yan Jiali, Zhang Qinghua, Zhang Xiaoting, Wu Shenshen, GUI SONGTAO, Wei Wenjie, Wang Yuebin, Luo Yun, Jiang Chengling, Deng Min, Jin Min, Jian Liumei, Yu Yanhui, Zhang Maolin, Yang Xiaohong, Hufford B. Matthew, Fernie R. Alisdair, Warburton L. Marilyn, Ross-Ibarra Jeffrey*, Yan Jianbing*
Publication year: 2022
Nature Genetics, 1-10

A Heavy Metal Transporter Gene ZmHMA3a Promises Safe Agricultural Production on Cadmium-Polluted Arable Land

article Zea GWAS Heavy metal ZmHMA3a
Chen Yuanyuan#, Chao Zhen-Fei#, Jin Min, Wang Ya-Ling, Li Yaoyao, Wu Jia-Chen, Xiao Yingjie, Peng Yong, Lv Qiao-Yan, GUI SONGTAO, Wang Xiaqing, Han Mei-Ling, Fernie R. Alisdair, Chao Dai-Yin*, Yan Jianbing*
Publication year: 2022
Journal of Genetics and Genomics, S1673852722002156

Three Types of Genes Underlying the Gametophyte Factor1 Locus Cause Unilateral Cross Incompatibility in Maize

article Zea Unilateral Cross Incompatibility ga1
Wang Yuebin#, Li Wenqiang#, Wang Luxi, Yan Jiali, Lu Gang, Yang Ning, Xu Jieting, Wang Yuqing, GUI SONGTAO, Chen Gengshen, Li Shuyan, Wu Chengxiu, Guo Tingting, Xiao Yingjie, Warburton L. Marilyn, Fernie R. Alisdair, Dresselhaus Thomas, Yan Jianbing*
Publication year: 2022
Nature Communications, 4498, 13

The Transcription Factor GATA10 Regulates Fertility Conversion of a Two‐line Hybrid Tms5 Mutant Rice via the Modulation of Ub_L40 Expression

article rice TF-GATA10 atac-seq
Jin Jing, GUI SONGTAO, Li Qian, Wang Ying, Zhang Hongyuan, Zhu Zhixuan, Chen Hao, Sun Yueyang, Zou Yu, Huang Xingguo, Ding Yi*
Publication year: 2020
Journal of Integrative Plant Biology, 1034--1056, 62

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era

article maize database multi-omics Integration
GUI SONGTAO, Yang Linfeng, Li Jianbo, Luo Jingyun, Xu Xiaokai, Yuan Jianyu, Chen Lu, Li Wenqiang, Yang Xin, Wu Shenshen, Li Shuyan, Wang Yuebin, Zhu Yabing, Gao Qiang, Yang Ning, Yan Jianbing*
Publication year: 2020
iScience, 101241, 23

Genome Assembly of a Tropical Maize Inbred Line Provides Insights into Structural Variation and Crop Improvement

article maize genome assembly structural variation crop improvement
Yang Ning#, Liu Jie#, Gao Qiang#, GUI SONGTAO, Chen Lu, Yang Linfeng, Huang Juan, Deng Tianquan, Luo Jingyun, He Lijuan, Wang Yuebin, Xu Pengwei, Peng Yong, Shi Zhuoxing, Lan Liu, Ma Zhiyun, Yang Xin, Zhang Qianqian, Bai Mingzhou, Li San, Li Wenqiang, Liu Lei, Jackson David, Yan Jianbing*
Publication year: 2019
Nature Genetics, 1052--1059, 51

Improving Nelumbo Nucifera Genome Assemblies Using High‐resolution Genetic Maps and BioNano Genome Mapping Reveals Ancient Chromosome Rearrangements

article Nelumbo nucifera genetic map bionano ancient chromosome rearrangements
GUI SONGTAO, Peng Jing, Wang Xiaolei, Wu Zhihua, Cao Rui, Salse Jérôme, Zhang Hongyuan, Zhu Zhixuan, Xia Qiuju, Quan Zhiwu, Shu Liping, Ke Wedong, Ding Yi*
Publication year: 2018
The Plant Journal, 721--734, 94

A High Density Genetic Map Derived from RAD Sequencing and Its Application in QTL Analysis of Yield-Related Traits in Vigna Unguiculata

article RAD sequencing genetic map vigna unguiculata
Pan Lei, Wang Nian, Wu Zhihua, Guo Rui, Yu Xiaolu, Zheng Yu, Xia Qiuju, GUI SONGTAO, Chen Chanyou*
Publication year: 2017
Frontiers in Plant Science, 1544, 8

The NnCenH3 Protein and Centromeric DNA Sequence Profiles of Nelumbo Nucifera Gaertn. (Sacred Lotus) Reveal the DNA Structures and Dynamics of Centromeres in Basal Eudicots

article Nelumbo nucifera centromeric DNA centromeric protein
Zhu Zhixuan, GUI SONGTAO, Jin Jing, Yi Rong, Wu Zhihua, Qian Qian, Ding Yi*
Publication year: 2016
The Plant Journal, 568--582, 87

Development and Characterization of Polymorphic MicroRNA-Based Microsatellite Markers in Nelumbo Nucifera (Nelumbonaceae)

article Nelumbo nucifera microsatellite microRNA
Wang Xiaolei, GUI SONGTAO, Pan Lei, Hu Jihong, Ding Yi*
Publication year: 2016
Applications in Plant Sciences, 1500091, 4

The Mitochondrial Genome Map of Nelumbo Nucifera Reveals Ancient Evolutionary Features

article Nelumbo nucifera mitochondrial genome evolution
GUI SONGTAO#, Wu Zhihua#, Zhang Hongyuan, Zheng Yinzhen, Zhu Zhixuan, Liang Dequan, Ding Yi*
Publication year: 2016
Scientific Reports, 30158, 6

Genome-Wide Identification of SSR and SNP Markers Based on Whole-Genome Re-Sequencing of a Thailand Wild Sacred Lotus (Nelumbo Nucifera)

article Nelumbo nucifera WGS SSR SNP
Hu Jihong#, GUI SONGTAO#, Zhu Zhixuan, Wang Xiaolei, Ke Weidong, Ding Yi*
Publication year: 2015
PLOS ONE, e0143765, 10

A Precise Chloroplast Genome of Nelumbo Nucifera (Nelumbonaceae) Evaluated with Sanger, Illumina MiSeq, and PacBio RS II Sequencing Platforms: Insight into the Plastid Evolution of Basal Eudicots

article Nelumbo nucifera Evolutionary Chloroplast Genome Sanger Illumina MiSeq PacBio RS II
Wu Zhihua, GUI SONGTAO, Quan Zhiwu, Pan Lei, Wang Shuzhen, Ke Weidong, Liang Dequan, Ding Yi*
Publication year: 2014
BMC Plant Biology, 289, 14

Molecular Evolution and Functional Characterisation of an Ancient Phenylalanine Ammonia-Lyase Gene (NnPAL1) from Nelumbo Nucifera: Novel Insight into the Evolution of the PAL Family in Angiosperms

article Nelumbo nuciferaEvolutionaryNnPAL1
Wu Zhihua, GUI SONGTAO, Wang Shuzhen, Ding Yi*
Publication year: 2014
BMC Evolutionary Biology, 100, 14